{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "from sklearn import tree\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [],
   "source": [
    "learning_data = pd.read_table(\"acetylation_learning.txt\", sep='\\t', header=None, names=['ID', 'Sequence', 'State'])\n",
    "test_data = pd.read_table(\"acetylation_test.txt\", sep='\\t', header=None, names=['ID', 'Sequence', 'TrueState'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [],
   "source": [
    "encode={\"A\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"R\":[0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"N\":[0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"D\":[0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"C\":[0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"Q\":[0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"E\":[0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"G\":[0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"H\":[0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"I\":[0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"L\":[0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0],\n",
    "\t\t\"K\":[0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0],\n",
    "\t\t\"M\":[0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0],\n",
    "\t\t\"F\":[0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0],\n",
    "\t\t\"P\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0],\n",
    "\t\t\"S\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0],\n",
    "\t\t\"T\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0],\n",
    "\t\t\"W\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0],\n",
    "\t\t\"Y\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0],\n",
    "\t\t\"V\":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1],\n",
    "       }\n",
    "data_learn = []\n",
    "for row in learning_data.iterrows():\n",
    "    data_learn.append([row[1][1][0:3], True if row[1][2] == \"Ac\" else False])\n",
    "for i, v in enumerate(data_learn):\n",
    "    code = np.array([0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0])\n",
    "    for char in v[0]:\n",
    "        code += np.array(encode[char])\n",
    "    data_learn[i][0] = code\n",
    "    "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
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       " [array([0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]), True]]"
      ]
     },
     "execution_count": 14,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data_learn"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
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